Pyter¶

Pyter is an open-source Python package for analyzing virological data. It allows for flexible Bayesian inference of virus titers and virus environmental halflives from raw data on cell infection. Both endpoint titration and plaque assays are supported.

Pyter is designed to be fairly plug-and-play for the scientist who has a relatively standard problem but is a novice coder, but the API also permits a more experienced user to build their own custom models without reinventing the wheel.

Pyter uses NumPyro to specify models and perform inference from them.